ISDA: 8DZH

Deposition Date 2022-08-07

Release Date 2022-08-31

Last Version Date 2025-05-21

Entry Detail

PDB ID:

8DZH

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

Structure of SARS-CoV-2 Omicron BA.1.1.529 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody MB.02

Biological Source:

Source Organism(s):

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A (auth: B), B (auth: A), C
Chain Length:1285
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:antibody MB.02 light chain
Chain IDs:E (auth: D), G (auth: L), I (auth: J)
Chain Length:109
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:antibody MB.02 heavy chain
Chain IDs:D (auth: E), F (auth: H), H (auth: I)
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Function and Cryo-EM structures of broadly potent bispecific antibodies against multiple SARS-CoV-2 Omicron sublineages.

Ren, P, Hu, Y, Peng, L, Yang, L, Suzuki, K, Fang, Z, Bai, M, Zhou, L, Feng, Y, Zou, Y, Xiong, Y, Chen, S, Ren, P, Hu, Y, Peng, L, Yang, L, Suzuki, K, Fang, Z, Bai, M, Zhou, L, Feng, Y, Zou, Y, Xiong, Y, Chen, S.Show

Signal Transduct Target Ther 8 281 281 (2023)

PMID: 37518189 DOI: 10.1038/s41392-023-01509-1

Primary Citation of related structures

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