8DYT image
Entry Detail
PDB ID:
8DYT
EMDB ID:
Keywords:
Title:
Cryo-EM structure of 227 Fab in complex with (NPNA)8 peptide
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-08-05
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:227 Fab heavy chain
Chain IDs:D (auth: H), F (auth: A), H (auth: C), J (auth: E), L (auth: M), N (auth: O), P (auth: Q), R (auth: S)
Chain Length:453
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Circumsporozoite protein
Chain IDs:A (auth: I), B (auth: J)
Chain Length:32
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polypeptide(L)
Description:227 Fab light chain
Chain IDs:C (auth: L), E (auth: B), G (auth: D), I (auth: F), K (auth: N), M (auth: P), O (auth: R), Q (auth: T)
Chain Length:217
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Affinity-matured homotypic interactions induce spectrum of PfCSP structures that influence protection from malaria infection.
Nat Commun 14 4546 4546 (2023)
PMID: 37507365 DOI: 10.1038/s41467-023-40151-x

Abstact

The generation of high-quality antibody responses to Plasmodium falciparum (Pf) circumsporozoite protein (PfCSP), the primary surface antigen of Pf sporozoites, is paramount to the development of an effective malaria vaccine. Here we present an in-depth structural and functional analysis of a panel of potent antibodies encoded by the immunoglobulin heavy chain variable (IGHV) gene IGHV3-33, which is among the most prevalent and potent antibody families induced in the anti-PfCSP immune response and targets the Asn-Ala-Asn-Pro (NANP) repeat region. Cryo-electron microscopy (cryo-EM) reveals a remarkable spectrum of helical antibody-PfCSP structures stabilized by homotypic interactions between tightly packed fragments antigen binding (Fabs), many of which correlate with somatic hypermutation. We demonstrate a key role of these mutated homotypic contacts for high avidity binding to PfCSP and in protection from Pf malaria infection. Together, these data emphasize the importance of anti-homotypic affinity maturation in the frequent selection of IGHV3-33 antibodies and highlight key features underlying the potent protection of this antibody family.

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Primary Citation of related structures