8DYD image
Deposition Date 2022-08-04
Release Date 2024-01-10
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8DYD
Keywords:
Title:
Crystal structure of human SDHA-SDHAF2-SDHAF4 assembly intermediate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Gene (Uniprot):SDHA
Chain IDs:A
Chain Length:632
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase assembly factor 2, mitochondrial
Gene (Uniprot):SDHAF2
Chain IDs:B
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase assembly factor 4, mitochondrial
Gene (Uniprot):SDHAF4
Chain IDs:C
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Disordered-to-ordered transitions in assembly factors allow the complex II catalytic subunit to switch binding partners.
Nat Commun 15 473 473 (2024)
PMID: 38212624 DOI: 10.1038/s41467-023-44563-7

Abstact

Complex II (CII) activity controls phenomena that require crosstalk between metabolism and signaling, including neurodegeneration, cancer metabolism, immune activation, and ischemia-reperfusion injury. CII activity can be regulated at the level of assembly, a process that leverages metastable assembly intermediates. The nature of these intermediates and how CII subunits transfer between metastable complexes remains unclear. In this work, we identify metastable species containing the SDHA subunit and its assembly factors, and we assign a preferred temporal sequence of appearance of these species during CII assembly. Structures of two species show that the assembly factors undergo disordered-to-ordered transitions without the appearance of significant secondary structure. The findings identify that intrinsically disordered regions are critical in regulating CII assembly, an observation that has implications for the control of assembly in other biomolecular complexes.

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