ISDA

Deposition Date 2022-08-01

Release Date 2023-08-09

Last Version Date 2024-05-22

Entry Detail

PDB ID:

8DWF

Keywords:

HYDROLASE/DNA

Title:

Glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with substrate adenine

Biological Source:

Source Organism:

Geobacillus stearothermophilus (Taxon ID: 1422)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.60 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Adenine DNA glycosylase
Gene (Uniprot):mutY
Mutations:E43S
Chain IDs:A, D
Chain Length:365
Number of Molecules:2
Biological Source:Geobacillus stearothermophilus

UniProt ID:P83847 Pfam ID:PF00730, PF00633, PF10576, PF14815 EC:3.2.2.31

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3')
Chain IDs:B, E
Chain Length:11
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3')
Chain IDs:C, F
Chain Length:11
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules