8DWD image
Entry Detail
PDB ID:
8DWD
Keywords:
HYDROLASE/DNA
Title:
Adenine glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with an AP site generated by the enzyme acting on purine
Biological Source:
Source Organism:
Geobacillus stearothermophilus, synthetic construct
Host Organism:
Escherichia coli BL21(DE3)
PDB Version:
Deposition Date:
2022-08-01
Release Date:
2023-08-09
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.68 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
8DWD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Adenine DNA glycosylase
Mutations:E43S
Chain IDs:A
Chain Length:365
Number of Molecules:1
Biological Source:Geobacillus stearothermophilus
UniProt ID:P83847 Pfam ID:PF00730, PF00633, PF10576, PF14815 EC:3.2.2.31
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3')
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*TP*GP*TP*CP*CP*AP*(ORP)P*GP*TP*CP*T)-3')
Chain IDs:C
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
ACT
CA
SF4
Primary Citation
Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
To Be Published ? ? ? (?)
Primary Citation of related structures
8DWD