8DUJ image
Deposition Date 2022-07-27
Release Date 2023-05-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8DUJ
Title:
Global map in C1 of RyR1 particles in complex with ImperaCalcin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Chain IDs:B (auth: G), E (auth: A), H (auth: D), K (auth: J)
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP1B
Gene (Uniprot):FKBP1B
Chain IDs:C (auth: H), F (auth: B), I (auth: E), L (auth: K)
Chain Length:107
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):CALM1
Mutations:E32A, E68A, E105A, E141A
Chain IDs:D (auth: I), G (auth: C), J (auth: F), M (auth: L)
Chain Length:149
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Imperacalcin
Chain IDs:A (auth: M)
Chain Length:33
Number of Molecules:1
Biological Source:Pandinus imperator
Primary Citation
Cryo-EM analysis of scorpion toxin binding to Ryanodine Receptors reveals subconductance that is abolished by PKA phosphorylation.
Sci Adv 9 eadf4936 eadf4936 (2023)
PMID: 37224245 DOI: 10.1126/sciadv.adf4936

Abstact

Calcins are peptides from scorpion venom with the unique ability to cross cell membranes, gaining access to intracellular targets. Ryanodine Receptors (RyR) are intracellular ion channels that control release of Ca2+ from the endoplasmic and sarcoplasmic reticulum. Calcins target RyRs and induce long-lived subconductance states, whereby single-channel currents are decreased. We used cryo-electron microscopy to reveal the binding and structural effects of imperacalcin, showing that it opens the channel pore and causes large asymmetry throughout the cytosolic assembly of the tetrameric RyR. This also creates multiple extended ion conduction pathways beyond the transmembrane region, resulting in subconductance. Phosphorylation of imperacalcin by protein kinase A prevents its binding to RyR through direct steric hindrance, showing how posttranslational modifications made by the host organism can determine the fate of a natural toxin. The structure provides a direct template for developing calcin analogs that result in full channel block, with potential to treat RyR-related disorders.

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Primary Citation of related structures