8DP1 image
Deposition Date 2022-07-14
Release Date 2023-07-19
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8DP1
Keywords:
VIRAL PROTEIN/Immune System
Title:
Cryo-EM structure of HIV-1 Env(BG505.T332N SOSIP) in complex with DH1030.1 Fab
Biological Source:
Source Organism:
Macaca mulatta (Taxon ID: 9544)
Human immunodeficiency virus 1 (Taxon ID: 11676)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8DP1 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DH1030.1 Fab light chain
Chain IDs:A (auth: M), G (auth: F), K (auth: O)
Chain Length:219
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:DH1030.1 Fab Heavy chain
Chain IDs:B (auth: R), F (auth: E), J (auth: N)
Chain Length:230
Number of Molecules:3
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:C (auth: S), H, L (auth: Q)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00516, PF00517
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:D (auth: W), E (auth: B), I (auth: J)
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00516, PF00517
Ligand Molecules
NAG
Primary Citation
Shared recognition mechanism for HIV-1 envelope-reactive V3 glycan broadly neutralizing B cell lineage maturation in humans and macaques
To Be Published ? ? ? (?)
Primary Citation of related structures
8DOW
8DKF