8DNN image
Entry Detail
PDB ID:
8DNN
Title:
Crystal structure of neutralizing antibody 80 in complex with SARS-CoV-2 receptor binding domain
Biological Source:
PDB Version:
Deposition Date:
2022-07-11
Release Date:
2023-05-24
Method Details:
Experimental Method:
Resolution:
3.12 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:A, D
Chain Length:228
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:80 FAB HEAVY CHAIN
Chain IDs:B, E
Chain Length:227
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:80 FAB LIGHT CHAIN
Chain IDs:C, F
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A multi-specific, multi-affinity antibody platform neutralizes sarbecoviruses and confers protection against SARS-CoV-2 in vivo.
Sci Transl Med 15 eadf4549 eadf4549 (2023)
PMID: 37224226 DOI: 10.1126/scitranslmed.adf4549

Abstact

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of coronavirus disease 2019 (COVID-19), has been responsible for a global pandemic. Monoclonal antibodies (mAbs) have been used as antiviral therapeutics; however, these therapeutics have been limited in efficacy by viral sequence variability in emerging variants of concern (VOCs) and in deployment by the need for high doses. In this study, we leveraged the multi-specific, multi-affinity antibody (Multabody, MB) platform, derived from the human apoferritin protomer, to enable the multimerization of antibody fragments. MBs were shown to be highly potent, neutralizing SARS-CoV-2 at lower concentrations than their corresponding mAb counterparts. In mice infected with SARS-CoV-2, a tri-specific MB targeting three regions within the SARS-CoV-2 receptor binding domain was protective at a 30-fold lower dose than a cocktail of the corresponding mAbs. Furthermore, we showed in vitro that mono-specific MBs potently neutralize SARS-CoV-2 VOCs by leveraging augmented avidity, even when corresponding mAbs lose their ability to neutralize potently, and that tri-specific MBs expanded the neutralization breadth beyond SARS-CoV-2 to other sarbecoviruses. Our work demonstrates how avidity and multi-specificity combined can be leveraged to confer protection and resilience against viral diversity that exceeds that of traditional monoclonal antibody therapies.

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Primary Citation of related structures