8DN3 image
Deposition Date 2022-07-10
Release Date 2023-10-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8DN3
Title:
Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, apo state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.55 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycine receptor subunit alpha-1
Gene (Uniprot):GLRA1
Chain IDs:A (auth: D), B (auth: A), C (auth: B), D (auth: C)
Chain Length:367
Number of Molecules:4
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycine receptor subunit beta,Green fluorescent protein,Glycine receptor beta
Gene (Uniprot):GLRB, GFP, GLRB
Chain IDs:E
Chain Length:680
Number of Molecules:1
Biological Source:Homo sapiens, Aequorea victoria
Primary Citation
Asymmetric gating of a human hetero-pentameric glycine receptor.
Nat Commun 14 6377 6377 (2023)
PMID: 37821459 DOI: 10.1038/s41467-023-42051-6

Abstact

Hetero-pentameric Cys-loop receptors constitute a major type of neurotransmitter receptors that enable signal transmission and processing in the nervous system. Despite intense investigations into their working mechanism and pharmaceutical potentials, how neurotransmitters activate these receptors remains unclear due to the lack of high-resolution structural information in the activated open state. Here we report near-atomic resolution structures resolved in digitonin consistent with all principle functional states of the human α1β GlyR, which is a major Cys-loop receptor that mediates inhibitory neurotransmission in the central nervous system of adults. Glycine binding induces cooperative and symmetric structural rearrangements in the neurotransmitter-binding extracellular domain but asymmetrical pore dilation in the transmembrane domain. Symmetric response in the extracellular domain is consistent with electrophysiological data showing cooperative glycine activation and contribution from both α1 and β subunits. A set of functionally essential but differentially charged amino acid residues in the transmembrane domain of the α1 and β subunits explains asymmetric activation. These findings provide a foundation for understanding how the gating of the Cys-loop receptor family members diverges to accommodate specific physiological environments.

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