8DKY image
Deposition Date 2022-07-06
Release Date 2022-09-21
Last Version Date 2023-10-18
Entry Detail
PDB ID:
8DKY
Title:
Crystal structure of the Aquifex aeolicus Wzt Carbohydrate Binding Domain bound to 3-O-methyl-D-mannose
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.61 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ABC transporter
Gene (Uniprot):abcT4
Chain IDs:A, B
Chain Length:144
Number of Molecules:2
Biological Source:Aquifex aeolicus VF5
Ligand Molecules
Primary Citation
Molecular basis for polysaccharide recognition and modulated ATP hydrolysis by the O antigen ABC transporter.
Nat Commun 13 5226 5226 (2022)
PMID: 36064941 DOI: 10.1038/s41467-022-32597-2

Abstact

O antigens are ubiquitous protective extensions of lipopolysaccharides in the extracellular leaflet of the Gram-negative outer membrane. Following biosynthesis in the cytosol, the lipid-linked polysaccharide is transported to the periplasm by the WzmWzt ABC transporter. Often, O antigen secretion requires the chemical modification of its elongating terminus, which the transporter recognizes via a carbohydrate-binding domain (CBD). Here, using components from A. aeolicus, we identify the O antigen structure with methylated mannose or rhamnose as its cap. Crystal and cryo electron microscopy structures reveal how WzmWzt recognizes this cap between its carbohydrate and nucleotide-binding domains in a nucleotide-free state. ATP binding induces drastic conformational changes of its CBD, terminating interactions with the O antigen. ATPase assays and site directed mutagenesis reveal reduced hydrolytic activity upon O antigen binding, likely to facilitate polymer loading into the ABC transporter. Our results elucidate critical steps in the recognition and translocation of polysaccharides by ABC transporters.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback