8DKB image
Entry Detail
PDB ID:
8DKB
Keywords:
Title:
Crystal Structure of human YEATS4 in complex with Pfizer small molecule compound 3b
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-07-05
Release Date:
2023-01-11
Method Details:
Experimental Method:
Resolution:
2.58 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:YEATS domain-containing protein 4
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:155
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

A series of small-molecule YEATS4 binders have been discovered as part of an ongoing research effort to generate high-quality probe molecules for emerging and/or challenging epigenetic targets. Analogues such as 4d and 4e demonstrate excellent potency and selectivity for YEATS4 binding versus YEATS1,2,3 and exhibit good physical properties and in vitro safety profiles. A new X-ray crystal structure confirms direct binding of this chemical series to YEATS4 at the lysine acetylation recognition site of the YEATS domain. Multiple analogues engage YEATS4 with nanomolar potency in a whole-cell nanoluciferase bioluminescent resonance energy transfer assay. Rodent pharmacokinetic studies demonstrate the competency of several analogues as in vivo-capable binders.

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Primary Citation of related structures