8DK6 image
Deposition Date 2022-07-03
Release Date 2023-03-29
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8DK6
Keywords:
Title:
Structure of hepatitis C virus envelope N-terminal truncated glycoprotein 2 (E2) (residues 456-713) from J6 genotype
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein E2
Chain IDs:A (auth: E)
Chain Length:258
Number of Molecules:1
Biological Source:Hepatitis C virus isolate HC-J6
Polymer Type:polypeptide(L)
Molecule:2A12 Fab Heavy chain
Chain IDs:B (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:2A12 Fab light chain
Chain IDs:C (auth: L)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Regions of hepatitis C virus E2 required for membrane association.
Nat Commun 14 433 433 (2023)
PMID: 36702826 DOI: 10.1038/s41467-023-36183-y

Abstact

Hepatitis C virus (HCV) uses a hybrid entry mechanism. Current structural data suggest that upon exposure to low pH and Cluster of Differentiation 81 (CD81), the amino terminus of envelope glycoprotein E2 becomes ordered and releases an internal loop with two invariant aromatic residues into the host membrane. Here, we present the structure of an amino-terminally truncated E2 with the membrane binding loop in a bent conformation and the aromatic side chains sequestered. Comparison with three previously reported E2 structures with the same Fab indicates that this internal loop is flexible, and that local context influences the exposure of hydrophobic residues. Biochemical assays show that the amino-terminally truncated E2 lacks the baseline membrane-binding capacity of the E2 ectodomain. Thus, the amino terminal region is a critical determinant for both CD81 and membrane interaction. These results provide new insights into the HCV entry mechanism.

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