8DGX image
Entry Detail
PDB ID:
8DGX
Keywords:
Title:
Crystal structure of MERS-CoV spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC68.109 isolated from a vaccinated COVID-19 convalescent
Biological Source:
PDB Version:
Deposition Date:
2022-06-24
Release Date:
2023-01-25
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike protein S2'
Chain IDs:E (auth: C), F (auth: D)
Chain Length:27
Number of Molecules:2
Biological Source:Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
Polymer Type:polypeptide(L)
Description:Antibody CC68.109 Fab heavy chain
Chain IDs:A (auth: H), C (auth: A)
Chain Length:221
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody CC68.109 Fab light chain
Chain IDs:B (auth: L), D (auth: B)
Chain Length:218
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Pan-betacoronavirus neutralizing antibodies may hold the key to developing broadly protective vaccines against novel pandemic coronaviruses and to more effectively respond to SARS-CoV-2 variants. The emergence of Omicron and subvariants of SARS-CoV-2 illustrates the limitations of solely targeting the receptor-binding domain (RBD) of the spike (S) protein. Here, we isolated a large panel of broadly neutralizing antibodies (bnAbs) from SARS-CoV-2 recovered-vaccinated donors, which targets a conserved S2 region in the betacoronavirus spike fusion machinery. Select bnAbs showed broad in vivo protection against all three deadly betacoronaviruses, SARS-CoV-1, SARS-CoV-2, and MERS-CoV, which have spilled over into humans in the past two decades. Structural studies of these bnAbs delineated the molecular basis for their broad reactivity and revealed common antibody features targetable by broad vaccination strategies. These bnAbs provide new insights and opportunities for antibody-based interventions and for developing pan-betacoronavirus vaccines.

Legend

Protein

Chemical

Disease

Primary Citation of related structures