8DGQ image
Entry Detail
PDB ID:
8DGQ
Title:
Crystal structure of p120RasGAP SH2-SH3-SH2 in complex with p190RhoGAP doubly phosphorylated peptide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-06-24
Release Date:
2022-11-02
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ras GTPase-activating protein 1
Chain IDs:A, B
Chain Length:273
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Rho GTPase-activating protein 35
Chain IDs:C (auth: U), D (auth: V)
Chain Length:29
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR C TYR modified residue
Ligand Molecules
Primary Citation
Tandem engagement of phosphotyrosines by the dual SH2 domains of p120RasGAP.
Structure 30 1603 1614.e5 (2022)
PMID: 36417908 DOI: 10.1016/j.str.2022.10.009

Abstact

p120RasGAP is a multidomain GTPase-activating protein for Ras. The presence of two Src homology 2 domains in an SH2-SH3-SH2 module raises the possibility that p120RasGAP simultaneously binds dual phosphotyrosine residues in target proteins. One known binding partner with two proximal phosphotyrosines is p190RhoGAP, a GTPase-activating protein for Rho GTPases. Here, we present the crystal structure of the p120RasGAP SH2-SH3-SH2 module bound to a doubly tyrosine-phosphorylated p190RhoGAP peptide, revealing simultaneous phosphotyrosine recognition by the SH2 domains. The compact arrangement places the SH2 domains in close proximity resembling an SH2 domain tandem and exposed SH3 domain. Affinity measurements support synergistic binding, while solution scattering reveals that dual phosphotyrosine binding induces compaction of this region. Our studies reflect a binding mode that limits conformational flexibility within the SH2-SH3-SH2 cassette and relies on the spacing and sequence surrounding the two phosphotyrosines, potentially representing a selectivity mechanism for downstream signaling events.

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Primary Citation of related structures