8DBP image
Deposition Date 2022-06-14
Release Date 2023-01-25
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8DBP
Title:
E. coli ATP synthase imaged in 10mM MgATP State1 "half-up
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit alpha
Chain IDs:K (auth: A), L (auth: B), M (auth: C)
Chain Length:513
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit beta
Chain IDs:N (auth: D), O (auth: E), P (auth: F)
Chain Length:471
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase gamma chain
Chain IDs:Q (auth: G)
Chain Length:287
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase epsilon chain
Chain IDs:R (auth: H)
Chain Length:139
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit c
Chain IDs:A (auth: I), B (auth: J), C (auth: L), D (auth: M), E (auth: N), F (auth: O), G (auth: P), H (auth: Q), I (auth: R), J (auth: S)
Chain Length:79
Number of Molecules:10
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit delta
Chain IDs:S (auth: W)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit b
Chain IDs:T (auth: X), U (auth: Y)
Chain Length:156
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit a
Chain IDs:V (auth: a)
Chain Length:513
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.
Commun Biol 6 26 26 (2023)
PMID: 36631659 DOI: 10.1038/s42003-023-04414-z

Abstact

F1Fo ATP synthase functions as a biological generator and makes a major contribution to cellular energy production. Proton flow generates rotation in the Fo motor that is transferred to the F1 motor to catalyze ATP production, with flexible F1/Fo coupling required for efficient catalysis. F1Fo ATP synthase can also operate in reverse, hydrolyzing ATP and pumping protons, and in bacteria this function can be regulated by an inhibitory ε subunit. Here we present cryo-EM data showing E. coli F1Fo ATP synthase in different rotational and inhibited sub-states, observed following incubation with 10 mM MgATP. Our structures demonstrate how structural transitions within the inhibitory ε subunit induce torsional movement in the central stalk, thereby enabling its rotation within the Fο motor. This highlights the importance of the central rotor for flexible coupling of the F1 and Fo motors and provides further insight into the regulatory mechanism mediated by subunit ε.

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