8DAM image
Entry Detail
PDB ID:
8DAM
Title:
nbF3:nbE8:CaV beta subunit 1b complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-13
Release Date:
2022-12-21
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Voltage-dependent L-type calcium channel subunit beta-1
Chain IDs:A
Chain Length:370
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:nanobody F3
Chain IDs:B
Chain Length:123
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:Nanobody E8
Chain IDs:C
Chain Length:130
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Selective posttranslational inhibition of Ca V beta 1 -associated voltage-dependent calcium channels with a functionalized nanobody.
Nat Commun 13 7556 7556 (2022)
PMID: 36494348 DOI: 10.1038/s41467-022-35025-7

Abstact

Ca2+ influx through high-voltage-activated calcium channels (HVACCs) controls diverse cellular functions. A critical feature enabling a singular signal, Ca2+ influx, to mediate disparate functions is diversity of HVACC pore-forming α1 and auxiliary CaVβ1-CaVβ4 subunits. Selective CaVα1 blockers have enabled deciphering their unique physiological roles. By contrast, the capacity to post-translationally inhibit HVACCs based on CaVβ isoform is non-existent. Conventional gene knockout/shRNA approaches do not adequately address this deficit owing to subunit reshuffling and partially overlapping functions of CaVβ isoforms. Here, we identify a nanobody (nb.E8) that selectively binds CaVβ1 SH3 domain and inhibits CaVβ1-associated HVACCs by reducing channel surface density, decreasing open probability, and speeding inactivation. Functionalizing nb.E8 with Nedd4L HECT domain yielded Chisel-1 which eliminated current through CaVβ1-reconstituted CaV1/CaV2 and native CaV1.1 channels in skeletal muscle, strongly suppressed depolarization-evoked Ca2+ influx and excitation-transcription coupling in hippocampal neurons, but was inert against CaVβ2-associated CaV1.2 in cardiomyocytes. The results introduce an original method for probing distinctive functions of ion channel auxiliary subunit isoforms, reveal additional dimensions of CaVβ1 signaling in neurons, and describe a genetically-encoded HVACC inhibitor with unique properties.

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