8D9X image
Deposition Date 2022-06-11
Release Date 2023-06-14
Last Version Date 2023-09-20
Entry Detail
PDB ID:
8D9X
Keywords:
Title:
Cryo-EM structure of human DELE1 in oligomeric form
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Maltodextrin-binding protein,DAP3-binding cell death enhancer 1 short form
Gene (Uniprot):DELE1
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:675
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
DELE1 oligomerization promotes integrated stress response activation.
Nat.Struct.Mol.Biol. 30 1295 1302 (2023)
PMID: 37550454 DOI: 10.1038/s41594-023-01061-0

Abstact

Mitochondria are dynamic organelles that continually respond to cellular stress. Recent studies have demonstrated that mitochondrial stress is relayed from mitochondria to the cytosol by the release of a proteolytic fragment of DELE1 that binds to the eIF2α kinase HRI to initiate integrated stress response (ISR) signaling. We report the cryo-electron microscopy structure of the C-terminal cleavage product of human DELE1, which assembles into a high-order oligomer. The oligomer consists of eight DELE1 monomers that assemble with D4 symmetry via two sets of hydrophobic inter-subunit interactions. We identified the key residues involved in DELE1 oligomerization, and confirmed their role in stabilizing the octamer in vitro and in cells using mutagenesis. We further show that assembly-impaired DELE1 mutants are compromised in their ability to induce HRI-dependent ISR activation in cell culture models. Together, our findings provide molecular insights into the activity of DELE1 and how it signals to promote ISR activity following mitochondrial insult.

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Primary Citation of related structures