8D94 image
Deposition Date 2022-06-09
Release Date 2023-07-05
Last Version Date 2025-01-29
Entry Detail
PDB ID:
8D94
Keywords:
Title:
SAMHD1-DNA complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Gene (Uniprot):SAMHD1
Chain IDs:A, B, C, D
Chain Length:626
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*T)-3')
Chain IDs:E (auth: F), F (auth: G), G (auth: H), H (auth: I)
Chain Length:5
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Protein oxidation increases SAMHD1 binding ssDNA via its regulatory site.
Nucleic Acids Res. 51 7014 7024 (2023)
PMID: 37246644 DOI: 10.1093/nar/gkad447

Abstact

SAMHD1 dNTP hydrolase activity places it at the crossroad of several important biological pathways, such as viral restriction, cell cycle regulation, and innate immunity. Recently, a dNTPase independent function for SAMHD1 in homologous recombination (HR) of DNA double-strand breaks has been identified. SAMHD1 function and activity is regulated by several post-translational modifications, including protein oxidation. Here, we showed that oxidation of SAMHD1 increases ssDNA binding affinity and occurs in a cell cycle-dependent manner during S phase consistent with a role in HR. We determined the structure of oxidized SAMHD1 in complex with ssDNA. The enzyme binds ssDNA at the regulatory sites at the dimer interface. We propose a mechanism that oxidation of SAMHD1 acts as a functional switch to toggle between dNTPase activity and DNA binding.

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Primary Citation of related structures