8D8I image
Deposition Date 2022-06-08
Release Date 2022-12-14
Last Version Date 2024-04-03
Entry Detail
PDB ID:
8D8I
Keywords:
Title:
Crystal structure of Reverb alpha in complex with synthetic agonist
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor subfamily 1 group D member 1
Gene (Uniprot):NR1D1
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor corepressor 1
Gene (Uniprot):NCOR1
Mutations:C2056A
Chain IDs:B
Chain Length:20
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of synthetic agonist activation of the nuclear receptor REV-ERB.
Nat Commun 13 7131 7131 (2022)
PMID: 36414641 DOI: 10.1038/s41467-022-34892-4

Abstact

The nuclear receptor REV-ERB plays an important role in a range of physiological processes. REV-ERB behaves as a ligand-dependent transcriptional repressor and heme has been identified as a physiological agonist. Our current understanding of how ligands bind to and regulate transcriptional repression by REV-ERB is based on the structure of heme bound to REV-ERB. However, porphyrin (heme) analogues have been avoided as a source of synthetic agonists due to the wide range of heme binding proteins and potential pleotropic effects. How non-porphyrin synthetic agonists bind to and regulate REV-ERB has not yet been defined. Here, we characterize a high affinity synthetic REV-ERB agonist, STL1267, and describe its mechanism of binding to REV-ERB as well as the method by which it recruits transcriptional corepressor both of which are unique and distinct from that of heme-bound REV-ERB.

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Primary Citation of related structures