8D82 image
Deposition Date 2022-06-07
Release Date 2023-03-29
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8D82
Keywords:
Title:
Cryo-EM structure of human IL-6 signaling complex in detergent: model containing full extracellular domains
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.22 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Interleukin-6 receptor subunit beta
Gene (Uniprot):IL6ST
Chain IDs:C (auth: A), F (auth: E)
Chain Length:678
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Soluble interleukin-6 receptor subunit alpha
Gene (Uniprot):IL6R
Chain IDs:A (auth: C), D (auth: G)
Chain Length:346
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Interleukin-6
Gene (Uniprot):IL6
Chain IDs:B (auth: D), E (auth: H)
Chain Length:183
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into the assembly of gp130 family cytokine signaling complexes.
Sci Adv 9 eade4395 eade4395 (2023)
PMID: 36930708 DOI: 10.1126/sciadv.ade4395

Abstact

The interleukin-6 (IL-6) family cytokines signal through gp130 receptor homodimerization or heterodimerization with a second signaling receptor and play crucial roles in various cellular processes. We determined cryo-electron microscopy structures of five signaling complexes of this family, containing full receptor ectodomains bound to their respective ligands ciliary neurotrophic factor, cardiotrophin-like cytokine factor 1 (CLCF1), leukemia inhibitory factor, IL-27, and IL-6. Our structures collectively reveal similarities and differences in the assembly of these complexes. The acute bends at both signaling receptors in all complexes bring the membrane-proximal domains to a ~30 angstrom range but with distinct distances and orientations. We also reveal how CLCF1 engages its secretion chaperone cytokine receptor-like factor 1. Our data provide valuable insights for therapeutically targeting gp130-mediated signaling.

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Primary Citation of related structures