8D7R image
Entry Detail
PDB ID:
8D7R
EMDB ID:
Keywords:
Title:
Cryo-EM structure of human CLCF1 signaling complex: model containing the interaction core region
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-07
Release Date:
2023-03-29
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Interleukin-6 receptor subunit beta
Chain IDs:D (auth: A)
Chain Length:625
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Leukemia inhibitory factor receptor
Chain IDs:C (auth: B)
Chain Length:817
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ciliary neurotrophic factor receptor subunit alpha
Chain IDs:B (auth: C)
Chain Length:324
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cardiotrophin-like cytokine factor 1
Chain IDs:A (auth: D)
Chain Length:204
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into the assembly of gp130 family cytokine signaling complexes.
Sci Adv 9 eade4395 eade4395 (2023)
PMID: 36930708 DOI: 10.1126/sciadv.ade4395

Abstact

The interleukin-6 (IL-6) family cytokines signal through gp130 receptor homodimerization or heterodimerization with a second signaling receptor and play crucial roles in various cellular processes. We determined cryo-electron microscopy structures of five signaling complexes of this family, containing full receptor ectodomains bound to their respective ligands ciliary neurotrophic factor, cardiotrophin-like cytokine factor 1 (CLCF1), leukemia inhibitory factor, IL-27, and IL-6. Our structures collectively reveal similarities and differences in the assembly of these complexes. The acute bends at both signaling receptors in all complexes bring the membrane-proximal domains to a ~30 angstrom range but with distinct distances and orientations. We also reveal how CLCF1 engages its secretion chaperone cytokine receptor-like factor 1. Our data provide valuable insights for therapeutically targeting gp130-mediated signaling.

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Primary Citation of related structures