8D6S image
Entry Detail
PDB ID:
8D6S
Keywords:
Title:
Rana catesbeiana saxiphilin mutant - Y558A:STX (co-crystal)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-06
Release Date:
2022-11-02
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Saxiphilin
Mutations:Y558A
Chain IDs:A, B
Chain Length:851
Number of Molecules:2
Biological Source:Lithobates catesbeianus
Ligand Molecules
Primary Citation
Definition of a saxitoxin (STX) binding code enables discovery and characterization of the anuran saxiphilin family.
Proc.Natl.Acad.Sci.USA 119 e2210114119 e2210114119 (2022)
PMID: 36279441 DOI: 10.1073/pnas.2210114119

Abstact

American bullfrog (Rana castesbeiana) saxiphilin (RcSxph) is a high-affinity "toxin sponge" protein thought to prevent intoxication by saxitoxin (STX), a lethal bis-guanidinium neurotoxin that causes paralytic shellfish poisoning (PSP) by blocking voltage-gated sodium channels (NaVs). How specific RcSxph interactions contribute to STX binding has not been defined and whether other organisms have similar proteins is unclear. Here, we use mutagenesis, ligand binding, and structural studies to define the energetic basis of Sxph:STX recognition. The resultant STX "recognition code" enabled engineering of RcSxph to improve its ability to rescue NaVs from STX and facilitated discovery of 10 new frog and toad Sxphs. Definition of the STX binding code and Sxph family expansion among diverse anurans separated by ∼140 My of evolution provides a molecular basis for understanding the roles of toxin sponge proteins in toxin resistance and for developing novel proteins to sense or neutralize STX and related PSP toxins.

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