8D5N image
Deposition Date 2022-06-05
Release Date 2022-09-14
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8D5N
Keywords:
Title:
Crystal structure of Ld-HF10
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Toxoplasma gondii (Taxon ID: 5811)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, L-D alpha chain
Gene (Uniprot):H2-L
Chain IDs:A (auth: C), C (auth: A)
Chain Length:282
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Dense granule protein 6, HF10 peptide
Chain IDs:B (auth: E), D (auth: B)
Chain Length:16
Number of Molecules:2
Biological Source:Toxoplasma gondii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:E (auth: F), F (auth: H)
Chain Length:104
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Peptide Centric V beta Specific Germline Contacts Shape a Specialist T Cell Response.
Front Immunol 13 847092 847092 (2022)
PMID: 35967379 DOI: 10.3389/fimmu.2022.847092

Abstact

Certain CD8 T cell responses are particularly effective at controlling infection, as exemplified by elite control of HIV in individuals harboring HLA-B57. To understand the structural features that contribute to CD8 T cell elite control, we focused on a strongly protective CD8 T cell response directed against a parasite-derived peptide (HF10) presented by an atypical MHC-I molecule, H-2Ld. This response exhibits a focused TCR repertoire dominated by Vβ2, and a representative TCR (TG6) in complex with Ld-HF10 reveals an unusual structure in which both MHC and TCR contribute extensively to peptide specificity, along with a parallel footprint of TCR on its pMHC ligand. The parallel footprint is a common feature of Vβ2-containing TCRs and correlates with an unusual Vα-Vβ interface, CDR loop conformations, and Vβ2-specific germline contacts with peptides. Vβ2 and Ld may represent "specialist" components for antigen recognition that allows for particularly strong and focused T cell responses.

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Primary Citation of related structures