8D3X image
Deposition Date 2022-06-01
Release Date 2022-09-21
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8D3X
Title:
Human alpha3 Na+/K+-ATPase in its K+-occluded state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sodium/potassium-transporting ATPase subunit alpha-3
Gene (Uniprot):ATP1A3
Chain IDs:C (auth: A)
Chain Length:1013
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Sodium/potassium-transporting ATPase subunit beta-1
Gene (Uniprot):ATP1B1
Chain IDs:A (auth: B)
Chain Length:303
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:FXYD domain-containing ion transport regulator 6
Gene (Uniprot):FXYD6
Chain IDs:B (auth: G)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun 13 5293 5293 (2022)
PMID: 36075933 DOI: 10.1038/s41467-022-32990-x

Abstact

P2-type ATPase sodium-potassium pumps (Na+/K+-ATPases) are ion-transporting enzymes that use ATP to transport Na+ and K+ on opposite sides of the lipid bilayer against their electrochemical gradients to maintain ion concentration gradients across the membranes in all animal cells. Despite the available molecular architecture of the Na+/K+-ATPases, a complete molecular mechanism by which the Na+ and K+ ions access into and are released from the pump remains unknown. Here we report five cryo-electron microscopy (cryo-EM) structures of the human alpha3 Na+/K+-ATPase in its cytoplasmic side-open (E1), ATP-bound cytoplasmic side-open (E1•ATP), ADP-AlF4- trapped Na+-occluded (E1•P-ADP), BeF3- trapped exoplasmic side-open (E2P) and MgF42- trapped K+-occluded (E2•Pi) states. Our work reveals the atomically resolved structural detail of the cytoplasmic gating mechanism of the Na+/K+-ATPase.

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Primary Citation of related structures