8D0Y image
Deposition Date 2022-05-26
Release Date 2023-07-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8D0Y
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Crystal Structure of HIV-1 BG505 SOSIPv8 Trimer in Complex with CD4bs targeting antibody 21N13 and interface targeting antibody 35O22 at 4.7 Angstrom
Biological Source:
Source Organism:
Macaca mulatta (Taxon ID: 9544)
Human immunodeficiency virus 1 (Taxon ID: 11676)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
4.70 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 21 3
8D0Y validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505SOSIPv8 gp41
Chain IDs:F (auth: B)
Chain Length:146
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00517, PF00516
Polymer Type:polypeptide(L)
Molecule:35O22scFv Heavy Chain Variable
Chain IDs:A (auth: D)
Chain Length:128
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:35O22scFv Light Chain Variable
Chain IDs:B (auth: E)
Chain Length:111
Number of Molecules:1
Biological Source:Macaca mulatta
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505SOSIPv8 gp120
Chain IDs:E (auth: G)
Chain Length:455
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00517, PF00516
Polymer Type:polypeptide(L)
Molecule:PGT124 Fab Heavy Chain
Chain IDs:C (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:PGT124 Fab Light Chain
Chain IDs:D (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
NAG
Primary Citation
The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
To Be Published ? ? ? (?)
Primary Citation of related structures
8D01
5CEZ
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