8CPY image
Deposition Date 2023-03-03
Release Date 2023-09-27
Last Version Date 2023-09-27
Entry Detail
PDB ID:
8CPY
Keywords:
Title:
Extended cowpea chlorotic mottle virus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein
Gene (Uniprot):ORF3b
Chain IDs:A (auth: C), B (auth: D), C (auth: I)
Chain Length:190
Number of Molecules:3
Biological Source:Cowpea chlorotic mottle virus
Ligand Molecules
Primary Citation
Fast viral dynamics revealed by microsecond time-resolved cryo-EM.
Nat Commun 14 5649 5649 (2023)
PMID: 37704664 DOI: 10.1038/s41467-023-41444-x

Abstact

Observing proteins as they perform their tasks has largely remained elusive, which has left our understanding of protein function fundamentally incomplete. To enable such observations, we have recently proposed a technique that improves the time resolution of cryo-electron microscopy (cryo-EM) to microseconds. Here, we demonstrate that microsecond time-resolved cryo-EM enables observations of fast protein dynamics. We use our approach to elucidate the mechanics of the capsid of cowpea chlorotic mottle virus (CCMV), whose large-amplitude motions play a crucial role in the viral life cycle. We observe that a pH jump causes the extended configuration of the capsid to contract on the microsecond timescale. While this is a concerted process, the motions of the capsid proteins involve different timescales, leading to a curved reaction path. It is difficult to conceive how such a detailed picture of the dynamics could have been obtained with any other method, which highlights the potential of our technique. Crucially, our experiments pave the way for microsecond time-resolved cryo-EM to be applied to a broad range of protein dynamics that previously could not have been observed. This promises to fundamentally advance our understanding of protein function.

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Primary Citation of related structures