8CM5 image
Deposition Date 2023-02-17
Release Date 2023-09-27
Last Version Date 2024-01-03
Entry Detail
PDB ID:
8CM5
Keywords:
Title:
W-formate dehydrogenase C872A from Desulfovibrio vulgaris
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.23
R-Value Work:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase, alpha subunit, selenocysteine-containing
Gene (Uniprot):fdnG-1
Mutations:C872A
Chain IDs:A, C, E (auth: K), G (auth: R)
Chain Length:1013
Number of Molecules:4
Biological Source:Desulfovibrio vulgaris str. Hildenborough
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase, beta subunit, putative
Gene (Uniprot):DVU_0588
Chain IDs:B, D, F (auth: L), H (auth: S)
Chain Length:215
Number of Molecules:4
Biological Source:Desulfovibrio vulgaris str. Hildenborough
Primary Citation
An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol. 20 111 119 (2024)
PMID: 37985883 DOI: 10.1038/s41589-023-01484-2

Abstact

Metal-dependent formate dehydrogenases reduce CO2 with high efficiency and selectivity, but are usually very oxygen sensitive. An exception is Desulfovibrio vulgaris W/Sec-FdhAB, which can be handled aerobically, but the basis for this oxygen tolerance was unknown. Here we show that FdhAB activity is controlled by a redox switch based on an allosteric disulfide bond. When this bond is closed, the enzyme is in an oxygen-tolerant resting state presenting almost no catalytic activity and very low formate affinity. Opening this bond triggers large conformational changes that propagate to the active site, resulting in high activity and high formate affinity, but also higher oxygen sensitivity. We present the structure of activated FdhAB and show that activity loss is associated with partial loss of the metal sulfido ligand. The redox switch mechanism is reversible in vivo and prevents enzyme reduction by physiological formate levels, conferring a fitness advantage during O2 exposure.

Legend

Protein

Chemical

Disease

Primary Citation of related structures