8CIW image
Deposition Date 2023-02-10
Release Date 2023-07-12
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8CIW
Keywords:
Title:
Methylsuccinyl-CoA dehydrogenase from Pseudomonas migulae with bound FAD and (2S)-methylsuccinyl-CoA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:(2S)-methylsuccinyl-CoA dehydrogenase
Gene (Uniprot):SAMN04490194_2123
Chain IDs:A, B
Chain Length:555
Number of Molecules:2
Biological Source:Pseudomonas migulae
Primary Citation
Exploring alternative pathways for the in vitro establishment of the HOPAC cycle for synthetic CO 2 fixation.
Sci Adv 9 eadh4299 eadh4299 (2023)
PMID: 37315145 DOI: 10.1126/sciadv.adh4299

Abstact

Nature has evolved eight different pathways for the capture and conversion of CO2, including the Calvin-Benson-Bassham cycle of photosynthesis. Yet, these pathways underlie constrains and only represent a fraction of the thousands of theoretically possible solutions. To overcome the limitations of natural evolution, we introduce the HydrOxyPropionyl-CoA/Acrylyl-CoA (HOPAC) cycle, a new-to-nature CO2-fixation pathway that was designed through metabolic retrosynthesis around the reductive carboxylation of acrylyl-CoA, a highly efficient principle of CO2 fixation. We realized the HOPAC cycle in a step-wise fashion and used rational engineering approaches and machine learning-guided workflows to further optimize its output by more than one order of magnitude. Version 4.0 of the HOPAC cycle encompasses 11 enzymes from six different organisms, converting ~3.0 mM CO2 into glycolate within 2 hours. Our work moves the hypothetical HOPAC cycle from a theoretical design into an established in vitro system that forms the basis for different potential applications.

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Primary Citation of related structures
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