8CHG image
Entry Detail
PDB ID:
8CHG
Title:
SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction for dipolar truncation with PDB 2NUZ
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-02-08
Release Date:
2023-03-08
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spectrin alpha chain, non-erythrocytic 1
Chain IDs:A
Chain Length:62
Number of Molecules:1
Biological Source:Gallus gallus
Ligand Molecules
Primary Citation
Integrated Assessment of the Structure and Dynamics of Solid Proteins.
J Phys Chem Lett 14 1725 1731 (2023)
PMID: 36757335 DOI: 10.1021/acs.jpclett.2c03398

Abstact

Understanding macromolecular function, interactions, and stability hinges on detailed assessment of conformational ensembles. For solid proteins, accurate elucidation of the spatial aspects of dynamics at physiological temperatures is limited by the qualitative character or low abundance of solid-state nuclear magnetic resonance internuclear distance information. Here, we demonstrate access to abundant proton-proton internuclear distances for integrated structural biology and chemistry with unprecedented accuracy. Apart from highest-resolution single-state structures, the exact distances enable molecular dynamics (MD) ensemble simulations orchestrated by a dense network of experimental interproton distance boundaries gathered in the context of their physical lattices. This direct embedding of experimental ensemble distances into MD will provide access to representative, atomic-level spatial details of conformational dynamics in supramolecular assemblies, crystalline and lipid-embedded proteins, and beyond.

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Primary Citation of related structures