8CGH image
Entry Detail
PDB ID:
8CGH
EMDB ID:
Keywords:
Title:
Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 3)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-02-04
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
2.68 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TAR DNA-binding protein 43
Chain IDs:A (auth: U), B (auth: A), C (auth: B), D (auth: C), E (auth: D)
Chain Length:414
Number of Molecules:5
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP.
Nature 620 898 903 (2023)
PMID: 37532939 DOI: 10.1038/s41586-023-06405-w

Abstact

The abnormal assembly of TAR DNA-binding protein 43 (TDP-43) in neuronal and glial cells characterizes nearly all cases of amyotrophic lateral sclerosis (ALS) and around half of cases of frontotemporal lobar degeneration (FTLD)1,2. A causal role for TDP-43 assembly in neurodegeneration is evidenced by dominantly inherited missense mutations in TARDBP, the gene encoding TDP-43, that promote assembly and give rise to ALS and FTLD3-7. At least four types (A-D) of FTLD with TDP-43 pathology (FTLD-TDP) are defined by distinct brain distributions of assembled TDP-43 and are associated with different clinical presentations of frontotemporal dementia8. We previously showed, using cryo-electron microscopy, that TDP-43 assembles into amyloid filaments in ALS and type B FTLD-TDP9. However, the structures of assembled TDP-43 in FTLD without ALS remained unknown. Here we report the cryo-electron microscopy structures of assembled TDP-43 from the brains of three individuals with the most common type of FTLD-TDP, type A. TDP-43 formed amyloid filaments with a new fold that was the same across individuals, indicating that this fold may characterize type A FTLD-TDP. The fold resembles a chevron badge and is unlike the double-spiral-shaped fold of ALS and type B FTLD-TDP, establishing that distinct filament folds of TDP-43 characterize different neurodegenerative conditions. The structures, in combination with mass spectrometry, led to the identification of two new post-translational modifications of assembled TDP-43, citrullination and monomethylation of R293, and indicate that they may facilitate filament formation and observed structural variation in individual filaments. The structures of TDP-43 filaments from type A FTLD-TDP will guide mechanistic studies of TDP-43 assembly, as well as the development of diagnostic and therapeutic compounds for TDP-43 proteinopathies.

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Primary Citation of related structures