8CF6 image
Entry Detail
PDB ID:
8CF6
Title:
Dimethylated RSL-R5 in complex with cucurbit[7]uril, F432 cage assembly
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-02-02
Release Date:
2023-07-05
Method Details:
Experimental Method:
Resolution:
1.34 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
F 4 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:RSL-R5
Chain IDs:A, B, C
Chain Length:90
Number of Molecules:3
Biological Source:Ralstonia solanacearum
Primary Citation
Cage versus sheet: Probing the Determinants of Protein - Cucurbit[7]uril Crystalline Architectures.
J.Struct.Biol. 215 107969 107969 (2023)
PMID: 37137399 DOI: 10.1016/j.jsb.2023.107969

Abstact

The donut-shaped cucurbit[n]urils (Qn) are a class of rigid macrocyclic receptor with protein recognition capabilities. Qn encapsulation of amino acid side chains can enable protein assembly. Recently, cucurbit[7]uril (Q7) has been applied as a molecular glue for organizing protein building blocks into crystalline architectures. Q7 co-crystallization with dimethylated Ralstonia solanacearum lectin (RSL*) has yielded novel crystalline architectures. Co-crystallization of RSL* and Q7 yields either cage- or sheet-like architectures which may be modulated via protein engineering. However, questions remain as to the factors dictating the formation of one architecture over another (cage versus sheet). Here, we make use of an engineered RSL*-Q7 system which co-crystallizes as the cage or sheet assembly with easily-distinguished crystal morphologies. Using this model system, we probe how the crystallization conditions dictate which crystalline architecture is adopted. Protein-ligand ratios and the sodium concentration were identified as key determinants for the growth of the cage versus sheet assemblies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures