8CCR image
Deposition Date 2023-01-27
Release Date 2023-08-09
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8CCR
Title:
Crystal structure of the T19D mutant of the de novo diheme binding 4D2
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:4D2 (mutant T19D)
Chain IDs:A
Chain Length:112
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
An expandable, modular de novo protein platform for precision redox engineering.
Proc.Natl.Acad.Sci.USA 120 e2306046120 e2306046120 (2023)
PMID: 37487099 DOI: 10.1073/pnas.2306046120

Abstact

The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme "maquette" protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry.

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