8CBE image
Entry Detail
PDB ID:
8CBE
Keywords:
Title:
SARS-CoV-2 Delta-RBD complexed with BA.4/5-2 and Beta-49 Fabs
Biological Source:
PDB Version:
Deposition Date:
2023-01-25
Release Date:
2024-02-07
Method Details:
Experimental Method:
Resolution:
3.16 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-49 heavy chain
Chain IDs:E (auth: A)
Chain Length:223
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-49 light chain
Chain IDs:D (auth: B)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:C (auth: E)
Chain Length:202
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:BA.4/5-2 heavy chain
Chain IDs:A (auth: H)
Chain Length:228
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:BA.4/5-2 light chain
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun 15 3284 3284 (2024)
PMID: 38627386 DOI: 10.1038/s41467-024-47393-3

Abstact

The rapid evolution of SARS-CoV-2 is driven in part by a need to evade the antibody response in the face of high levels of immunity. Here, we isolate spike (S) binding monoclonal antibodies (mAbs) from vaccinees who suffered vaccine break-through infections with Omicron sub lineages BA.4 or BA.5. Twenty eight potent antibodies are isolated and characterised functionally, and in some cases structurally. Since the emergence of BA.4/5, SARS-CoV-2 has continued to accrue mutations in the S protein, to understand this we characterize neutralization of a large panel of variants and demonstrate a steady attrition of neutralization by the panel of BA.4/5 mAbs culminating in total loss of function with recent XBB.1.5.70 variants containing the so-called 'FLip' mutations at positions 455 and 456. Interestingly, activity of some mAbs is regained on the recently reported variant BA.2.86.

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Primary Citation of related structures