ISDA

Deposition Date 2023-01-20

Release Date 2024-01-31

Last Version Date 2024-11-20

Entry Detail

PDB ID:

8C8H

Keywords:

VIRAL PROTEIN

Title:

Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme

Biological Source:

Source Organism:

Vaccinia virus GLV-1h68 (Taxon ID: 502057)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.84 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 147 kDa polypeptide
Gene (Uniprot):OPG105
Chain IDs:J (auth: A)
Chain Length:1286
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P07392 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 133 kDa polypeptide
Gene (Uniprot):OPG151
Chain IDs:A (auth: B)
Chain Length:1164
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:Q76ZP7 Pfam ID:PF12415, PF04565, PF04567, PF00562, PF04560

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 35 kDa subunit
Gene (Uniprot):OPG156
Chain IDs:M (auth: C)
Chain Length:305
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P24757 Pfam ID:PF03396

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 22 kDa subunit
Gene (Uniprot):OPG103
Chain IDs:B (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P68609 Pfam ID:PF05273

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 19 kDa subunit
Gene (Uniprot):OPG131
Chain IDs:C (auth: F)
Chain Length:164
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P68611 Pfam ID:PF05320

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 18 kDa subunit
Gene (Uniprot):OPG119
Chain IDs:D (auth: G)
Chain Length:161
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P04310 Pfam ID:PF03293

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated transcription-specificity factor RAP94
Gene (Uniprot):OPG109
Chain IDs:E (auth: I)
Chain Length:795
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P68438 Pfam ID:PF03294

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 7 kDa subunit
Gene (Uniprot):OPG090
Chain IDs:F (auth: J)
Chain Length:63
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P68317 Pfam ID:PF05864

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Early transcription factor 82 kDa subunit
Gene (Uniprot):OPG133
Chain IDs:H (auth: K)
Chain Length:710
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P20636 Pfam ID:PF04441

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Core protein E11
Gene (Uniprot):OPG073
Chain IDs:G (auth: R), K (auth: Q)
Chain Length:129
Number of Molecules:2
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P68448 Pfam ID:PF06138

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 30 kDa polypeptide
Gene (Uniprot):OPG066
Chain IDs:N (auth: S)
Chain Length:259
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P21603 Pfam ID:PF12410, PF01096 EC:2.7.7.6

Polymer Type:polyribonucleotide
Molecule:chr17.trna16-GlnTTG
Chain IDs:I (auth: U)
Chain Length:72
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nucleoside triphosphatase I
Gene (Uniprot):OPG123
Chain IDs:L (auth: Y)
Chain Length:631
Number of Molecules:1
Biological Source:Vaccinia virus GLV-1h68

UniProt ID:P05807 Pfam ID:PF00176, PF00271, PF08469 EC:3.6.1.15

Modified Residue