8C7J image
Deposition Date 2023-01-16
Release Date 2023-06-07
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8C7J
Keywords:
Title:
Phage display derived serum albumin binding knob domain engineered within a novel VH framework 3 bispecific antibody format
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab heavy chain with knob domain
Chain IDs:A
Chain Length:268
Number of Molecules:1
Biological Source:Cricetulus griseus
Polymer Type:polypeptide(L)
Molecule:Fab light chain
Chain IDs:B
Chain Length:214
Number of Molecules:1
Biological Source:Cricetulus griseus
Ligand Molecules
Primary Citation
Serum albumin binding knob domains engineered within a V H framework III bispecific antibody format and as chimeric peptides.
Front Immunol 14 1170357 1170357 (2023)
PMID: 37251411 DOI: 10.3389/fimmu.2023.1170357

Abstact

BACKGROUND Serum albumin binding is an established mechanism to extend the serum half-life of antibody fragments and peptides. The cysteine rich knob domains, isolated from bovine antibody ultralong CDRH3, are the smallest single chain antibody fragments described to date and versatile tools for protein engineering. METHODS Here, we used phage display of bovine immune material to derive knob domains against human and rodent serum albumins. These were used to engineer bispecific Fab fragments, by using the framework III loop as a site for knob domain insertion. RESULTS By this route, neutralisation of the canonical antigen (TNFα) was retained but extended pharmacokinetics in-vivo were achieved through albumin binding. Structural characterisation revealed correct folding of the knob domain and identified broadly common but non-cross-reactive epitopes. Additionally, we show that these albumin binding knob domains can be chemically synthesised to achieve dual IL-17A neutralisation and albumin binding in a single chemical entity. CONCLUSIONS This study enables antibody and chemical engineering from bovine immune material, via an accessible discovery platform.

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Primary Citation of related structures
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