8C6B image
Entry Detail
PDB ID:
8C6B
Keywords:
Title:
Light SFX structure of D.m(6-4)photolyase at 20ps time delay
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-01-11
Release Date:
2023-11-01
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cryptochrome-1
Chain IDs:A
Chain Length:500
Number of Molecules:1
Biological Source:Drosophila melanogaster
Primary Citation
Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem. 16 624 632 (2024)
PMID: 38225270 DOI: 10.1038/s41557-023-01413-9

Abstact

Charge-transfer reactions in proteins are important for life, such as in photolyases which repair DNA, but the role of structural dynamics remains unclear. Here, using femtosecond X-ray crystallography, we report the structural changes that take place while electrons transfer along a chain of four conserved tryptophans in the Drosophila melanogaster (6-4) photolyase. At femto- and picosecond delays, photoreduction of the flavin by the first tryptophan causes directed structural responses at a key asparagine, at a conserved salt bridge, and by rearrangements of nearby water molecules. We detect charge-induced structural changes close to the second tryptophan from 1 ps to 20 ps, identifying a nearby methionine as an active participant in the redox chain, and from 20 ps around the fourth tryptophan. The photolyase undergoes highly directed and carefully timed adaptations of its structure. This questions the validity of the linear solvent response approximation in Marcus theory and indicates that evolution has optimized fast protein fluctuations for optimal charge transfer.

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