8C41 image
Deposition Date 2022-12-30
Release Date 2024-01-10
Last Version Date 2024-01-24
Entry Detail
PDB ID:
8C41
Keywords:
ISOMERASE
Title:
High resolution structure of the Streptococcus pneumoniae topoisomerase IV-DNA complex with the novel fluoroquinolone Delafloxacin
Biological Source:
Source Organism:
Streptococcus pneumoniae (Taxon ID: 1313)
DNA molecule (Taxon ID: 2853804)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.39 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
P 31 2 1
8C41 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fused ParE30ParC55 CLEAVAGE COMPLEX of the TOPOISOMERASE IV
Mutations:Insertion of His at postion 648
Chain IDs:A, B
Chain Length:742
Number of Molecules:2
Biological Source:Streptococcus pneumoniae
UniProt ID:P72525 Pfam ID:PF00521
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*AP*TP*GP*AP*AP*T)-3')
Chain IDs:C (auth: E)
Chain Length:7
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3')
Chain IDs:D (auth: F)
Chain Length:11
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*TP*GP*CP*AP*T)-3')
Chain IDs:E (auth: G)
Chain Length:7
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3')
Chain IDs:F (auth: H)
Chain Length:11
Number of Molecules:1
Biological Source:DNA molecule
Ligand Molecules
CL
MG
MPD
TE9
Primary Citation
The nature of the molecular interactions at high resolution of the Streptococcus pneumoniae topoisomerase IV-DNA complex with the novel fluoroquinolone Delafloxacin.
To Be Published ? ? ? (?)
Primary Citation of related structures
8C41