8C0Z image
Deposition Date 2022-12-19
Release Date 2023-05-31
Last Version Date 2025-07-09
Entry Detail
PDB ID:
8C0Z
Keywords:
Title:
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aldehyde:ferredoxin oxidoreductase,tungsten-containing
Gene (Uniprot):ebA5005
Chain IDs:A, B
Chain Length:616
Number of Molecules:2
Biological Source:Aromatoleum aromaticum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron-sulfur cluster-binding protein potential subunit of aldehyde oxidoreductase
Gene (Uniprot):ebA5004
Chain IDs:C, E (auth: F)
Chain Length:192
Number of Molecules:2
Biological Source:Aromatoleum aromaticum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Similar to ferredoxin:NADH oxidoreductases or NADH oxidases,potential subunit of aldehyde oxidoreductase
Gene (Uniprot):TM0395
Chain IDs:D (auth: E)
Chain Length:424
Number of Molecules:1
Biological Source:Aromatoleum aromaticum
Primary Citation
A bacterial tungsten-containing aldehyde oxidoreductase forms an enzymatic decorated protein nanowire.
Sci Adv 9 eadg6689 eadg6689 (2023)
PMID: 37267359 DOI: 10.1126/sciadv.adg6689

Abstact

Aldehyde oxidoreductases (AORs) are tungsten enzymes catalyzing the oxidation of many different aldehydes to the corresponding carboxylic acids. In contrast to other known AORs, the enzyme from the denitrifying betaproteobacterium Aromatoleum aromaticum (AORAa) consists of three different subunits (AorABC) and uses nicotinamide adenine dinucleotide (NAD) as an electron acceptor. Here, we reveal that the enzyme forms filaments of repeating AorAB protomers that are capped by a single NAD-binding AorC subunit, based on solving its structure via cryo-electron microscopy. The polyferredoxin-like subunit AorA oligomerizes to an electron-conducting nanowire that is decorated with enzymatically active and W-cofactor (W-co) containing AorB subunits. Our structure further reveals the binding mode of the native substrate benzoate in the AorB active site. This, together with quantum mechanics:molecular mechanics (QM:MM)-based modeling for the coordination of the W-co, enables formulation of a hypothetical catalytic mechanism that paves the way to further engineering for applications in synthetic biology and biotechnology.

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Primary Citation of related structures