8BYV image
Deposition Date 2022-12-14
Release Date 2023-12-27
Last Version Date 2024-07-10
Entry Detail
PDB ID:
8BYV
Keywords:
Title:
Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribosome-binding factor A
Gene (Uniprot):rbfA
Chain IDs:U (auth: A)
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:A (auth: a)
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Gene (Uniprot):rpsB
Chain IDs:B (auth: b)
Chain Length:255
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S3
Gene (Uniprot):rpsC
Chain IDs:C (auth: c)
Chain Length:217
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Gene (Uniprot):rpsD
Chain IDs:D (auth: d)
Chain Length:200
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Gene (Uniprot):rpsE
Chain IDs:E (auth: e)
Chain Length:166
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Gene (Uniprot):rpsF
Chain IDs:F (auth: f)
Chain Length:98
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S7
Gene (Uniprot):rpsG
Chain IDs:G (auth: g)
Chain Length:156
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Gene (Uniprot):rpsH
Chain IDs:H (auth: h)
Chain Length:132
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Gene (Uniprot):rpsI
Chain IDs:I (auth: i)
Chain Length:132
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Gene (Uniprot):rpsJ
Chain IDs:J (auth: j)
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Gene (Uniprot):rpsK
Chain IDs:K (auth: k)
Chain Length:129
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:L (auth: l)
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Gene (Uniprot):rpsM
Chain IDs:M (auth: m)
Chain Length:121
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S14 type Z
Gene (Uniprot):rpsZ
Chain IDs:N (auth: n)
Chain Length:61
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Gene (Uniprot):rpsO
Chain IDs:O (auth: o)
Chain Length:89
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Gene (Uniprot):rpsP
Chain IDs:P (auth: p)
Chain Length:91
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Gene (Uniprot):rpsQ
Chain IDs:Q (auth: q)
Chain Length:87
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18
Gene (Uniprot):rpsR
Chain IDs:R (auth: r)
Chain Length:80
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S19
Gene (Uniprot):rpsS
Chain IDs:S (auth: s)
Chain Length:92
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Gene (Uniprot):rpsT
Chain IDs:T (auth: t)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325
Ligand Molecules
Primary Citation
Yet Another Similarity between Mitochondrial and Bacterial Ribosomal Small Subunit Biogenesis Obtained by Structural Characterization of RbfA from S. aureus.
Int J Mol Sci 24 ? ? (2023)
PMID: 36768442 DOI: 10.3390/ijms24032118

Abstact

Ribosome biogenesis is a complex and highly accurate conservative process of ribosomal subunit maturation followed by association. Subunit maturation comprises sequential stages of ribosomal RNA and proteins' folding, modification and binding, with the involvement of numerous RNAses, helicases, GTPases, chaperones, RNA, protein-modifying enzymes, and assembly factors. One such assembly factor involved in bacterial 30S subunit maturation is ribosomal binding factor A (RbfA). In this study, we present the crystal (determined at 2.2 Å resolution) and NMR structures of RbfA as well as the 2.9 Å resolution cryo-EM reconstruction of the 30S-RbfA complex from Staphylococcus aureus (S. aureus). Additionally, we show that the manner of RbfA action on the small ribosomal subunit during its maturation is shared between bacteria and mitochondria. The obtained results clarify the function of RbfA in the 30S maturation process and its role in ribosome functioning in general. Furthermore, given that S. aureus is a serious human pathogen, this study provides an additional prospect to develop antimicrobials targeting bacterial pathogens.

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Primary Citation of related structures