8BYT image
Deposition Date 2022-12-13
Release Date 2023-11-08
Last Version Date 2023-12-27
Entry Detail
PDB ID:
8BYT
Title:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S-layer homology domain-containing protein
Gene (Uniprot):KHZ90_07665
Chain IDs:A, B, C
Chain Length:435
Number of Molecules:3
Biological Source:Veillonella parvula
Ligand Molecules
Primary Citation
Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun 14 7152 7152 (2023)
PMID: 37932269 DOI: 10.1038/s41467-023-42601-y

Abstact

The outer membrane (OM) in diderm, or Gram-negative, bacteria must be tethered to peptidoglycan for mechanical stability and to maintain cell morphology. Most diderm phyla from the Terrabacteria group have recently been shown to lack well-characterised OM attachment systems, but instead have OmpM, which could represent an ancestral tethering system in bacteria. Here, we have determined the structure of the most abundant OmpM protein from Veillonella parvula (diderm Firmicutes) by single particle cryogenic electron microscopy. We also characterised the channel properties of the transmembrane β-barrel of OmpM and investigated the structure and PG-binding properties of its periplasmic stalk region. Our results show that OM tethering and nutrient acquisition are genetically linked in V. parvula, and probably other diderm Terrabacteria. This dual function of OmpM may have played a role in the loss of the OM in ancestral bacteria and the emergence of monoderm bacterial lineages.

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Protein

Chemical

Disease

Primary Citation of related structures