ISDA: 8BYH

Deposition Date 2022-12-12

Release Date 2023-01-11

Last Version Date 2024-02-07

Entry Detail

PDB ID:

8BYH

Keywords:

TRANSFERASE

Title:

Crystal structure of TrmD domain from Calditerrivibrio nitroreducens in complex with S-adenosyl-L-methionine

Biological Source:

Source Organism:

Calditerrivibrio nitroreducens DSM 19672 (Taxon ID: 768670)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.19 Å

R-Value Free:

0.20

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 43 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:tRNA (guanine-N(1)-)-methyltransferase
Gene (Uniprot):trmD
Chain IDs:A, B
Chain Length:243
Number of Molecules:2
Biological Source:Calditerrivibrio nitroreducens DSM 19672

UniProt ID:E4THH1 Pfam ID:PF01746

Ligand Molecules

EDO

GOL

SAM

Primary Citation

Are there double knots in proteins? Prediction and in vitro verification based on TrmD-Tm1570 fusion from C. nitroreducens. To be published

Sulkowska, J.Show

To Be Published ? ? ? (?)

Primary Citation of related structures