ISDA

Deposition Date 2022-12-07

Release Date 2023-10-11

Last Version Date 2024-06-26

Entry Detail

PDB ID:

8BWU

Keywords:

VIRAL PROTEIN

Title:

Crystal structure of SARS-CoV-2 nsp14 methyltransferase domain in complex with the SS148 inhibitor

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.36 Å

R-Value Free:

0.26

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 65

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription factor ETV6,Proofreading exoribonuclease nsp14
Gene (Uniprot):rep, ETV6
Chain IDs:A
Chain Length:308
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P41212,P0DTD1 Pfam ID:PF02198, PF06471 EC:2.7.7.48

Ligand Molecules

6NR

Primary Citation

Application of established computational techniques to identify potential SARS-CoV-2 Nsp14-MTase inhibitors in low data regimes

Nigam, A, Hurley, M.F.D, Li, F, Konkolova, E, Klima, M, Trylcova, J, Pollice, R, Cinaroglu, S.S, Levin-Konigsberg, R, Handjaya, J, Schapira, M, Chau, I, Perveen, S, Ng, H.L, Kaniskan, H.U, Han, Y, Singh, S, Gorgulla, C, Kundaje, A, Jin, J, Voelz, V.A, Weber, J, Nencka, R, Boura, E, Vedadi, M, Aspuru-Guzik, A, Nigam, A, Hurley, M.F.D, Li, F, Konkolova, E, Klima, M, Trylcova, J, Pollice, R, Cinaroglu, S.S, Levin-Konigsberg, R, Handjaya, J, Schapira, M, Chau, I, Perveen, S, Ng, H.L, Umit Kaniskan, H, Han, Y, Singh, S, Gorgulla, C, Kundaje, A, Jin, J, Voelz, V.A, Weber, J, Nencka, R, Boura, E, Vedadi, M, Aspuru-Guzik, A.Show

Digit Discov ? ? ? (2024)

DOI: 10.1039/D4DD00006D

Primary Citation of related structures