8BVL image
Entry Detail
PDB ID:
8BVL
Keywords:
Title:
Crystal structure of the IBR-RING2 domain of HOIL-1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-12-04
Release Date:
2023-01-18
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:RanBP-type and C3HC4-type zinc finger-containing protein 1
Chain IDs:A, B
Chain Length:145
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for ubiquitylation by HOIL-1.
Front Mol Biosci 9 1098144 1098144 (2022)
PMID: 36685275 DOI: 10.3389/fmolb.2022.1098144

Abstact

The linear ubiquitin chain assembly complex synthesises linear Ub chains which constitute a binding and activation platform for components of the TNF signalling pathway. One of the components of LUBAC is the ubiquitin ligase HOIL-1 which has been shown to generate oxyester linkages on several proteins and on linear polysaccharides. We show that HOIL-1 activity requires linear tetra-Ub binding which enables HOIL-1 to mono-ubiquitylate linear Ub chains and polysaccharides. Furthermore, we describe the crystal structure of a C-terminal tandem domain construct of HOIL-1 comprising the IBR and RING2 domains. Interestingly, the structure reveals a unique bi-nuclear Zn-cluster which substitutes the second zinc finger of the canonical RING2 fold. We identify the C-terminal histidine of this bi-nuclear Zn-cluster as the catalytic base required for the ubiquitylation activity of HOIL-1. Our study suggests that the unique zinc-coordinating architecture of RING2 provides a binding platform for ubiquitylation targets.

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