8BV9 image
Deposition Date 2023-01-18
Release Date 2023-10-18
Last Version Date 2025-11-05
Entry Detail
PDB ID:
8BV9
Keywords:
Title:
Acylphosphatase from E. coli
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.27
R-Value Work:
0.20
Space Group:
C 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acylphosphatase
Chain IDs:A
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
First 3-D structural evidence of a native-like intertwined dimer in the acylphosphatase family.
Biochem.Biophys.Res.Commun. 682 85 90 (2023)
PMID: 37804591 DOI: 10.1016/j.bbrc.2023.09.053

Abstact

Acylphosphatase (AcP, EC 3.6.1.7) is a small model protein conformed by a ferredoxin-like fold, profoundly studied to get insights into protein folding and aggregation processes. Numerous studies focused on the aggregation and/or amyloidogenic properties of AcPs suggest the importance of edge-β-strands in the process. In this work, we present the first crystallographic structure of Escherichia coli AcP (EcoAcP), showing notable differences with the only available NMR structure for this enzyme. EcoAcP is crystalised as an intertwined dimer formed by replacing a single C-terminal β-strand between two protomers, suggesting a flexible character of the C-terminal edge of EcoAcP. Despite numerous works where AcP from different sources have been used as a model system for protein aggregation, our domain-swapped EcoAcP structure is the first 3-D structural evidence of native-like aggregated species for any AcP reported to date, providing clues on molecular determinants unleashing aggregation.

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