8BTY image
Entry Detail
PDB ID:
8BTY
Keywords:
Title:
Structure of the active form of ScpB, the C5a-peptidase from Streptococcus agalactiae.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-11-30
Release Date:
2023-11-15
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C5a peptidase
Chain IDs:A, B
Chain Length:1001
Number of Molecules:2
Biological Source:Streptococcus agalactiae
Primary Citation
The 1.7 angstrom crystal structure of the C5a peptidase from Streptococcus agalactiae (ScpB) reveals an active site competent for catalysis.
Proteins 92 427 431 (2024)
PMID: 37921533 DOI: 10.1002/prot.26625

Abstact

A 1.7 Å structure is presented for an active form of the virulence factor ScpB, the C5a peptidase from Streptococcus agalactiae. The previously reported structure of the ScpB active site mutant exhibited a large separation (~20 Å) between the catalytic His and Ser residues. Significant differences are observed in the catalytic domain between the current and mutant ScpB structures resulting with a high RMSDCα (4.6 Å). The fold of the active form of ScpB is nearly identical to ScpA (RMSDCα 0.2 Å), the C5a-peptidase from Streptococcus pyogenes. Both ScpA and ScpB have comparable activity against human C5a, indicating neither enzyme require host proteins for C5a-ase activity. These studies are a first step in resolving reported differences in the specificities of these enzymes.

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