8BTS image
Deposition Date 2022-11-29
Release Date 2023-06-07
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8BTS
Keywords:
Title:
Nitrogenase MoFe protein from A. vinelandii alpha double mutant C45A/L158C
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.03 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nitrogenase protein alpha chain
Chain IDs:A, C, E (auth: H), G (auth: J)
Chain Length:500
Number of Molecules:4
Biological Source:Azotobacter vinelandii DJ
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein beta chain
Gene (Uniprot):nifK
Chain IDs:B, D, F (auth: I), H (auth: L)
Chain Length:523
Number of Molecules:4
Biological Source:Azotobacter vinelandii DJ
Primary Citation
Nitrogen Fixation and Hydrogen Evolution by Sterically Encumbered Mo-Nitrogenase.
Jacs Au 3 1521 1533 (2023)
PMID: 37234119 DOI: 10.1021/jacsau.3c00165

Abstact

The substrate-reducing proteins of all nitrogenases (MoFe, VFe, and FeFe) are organized as α2ß2(γ2) multimers with two functional halves. While their dimeric organization could afford improved structural stability of nitrogenases in vivo, previous research has proposed both negative and positive cooperativity contributions with respect to enzymatic activity. Here, a 1.4 kDa peptide was covalently introduced in the proximity of the P cluster, corresponding to the Fe protein docking position. The Strep-tag carried by the added peptide simultaneously sterically inhibits electron delivery to the MoFe protein and allows the isolation of partially inhibited MoFe proteins (where the half-inhibited MoFe protein was targeted). We confirm that the partially functional MoFe protein retains its ability to reduce N2 to NH3, with no significant difference in selectivity over obligatory/parasitic H2 formation. Our experiment concludes that wild-type nitrogenase exhibits negative cooperativity during the steady state regarding H2 and NH3 formation (under Ar or N2), with one-half of the MoFe protein inhibiting turnover in the second half. This emphasizes the presence and importance of long-range (>95 Å) protein-protein communication in biological N2 fixation in Azotobacter vinelandii.

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