8BQK image
Entry Detail
PDB ID:
8BQK
Keywords:
Title:
W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 22 min
Biological Source:
PDB Version:
Deposition Date:
2022-11-21
Release Date:
2023-01-18
Method Details:
Experimental Method:
Resolution:
1.59 Å
R-Value Free:
0.19
R-Value Work:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase, alpha subunit, selenocysteine-containing
Chain IDs:A
Chain Length:1013
Number of Molecules:1
Biological Source:Desulfovibrio vulgaris str. Hildenborough
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase, beta subunit, putative
Chain IDs:B
Chain Length:236
Number of Molecules:1
Biological Source:Desulfovibrio vulgaris str. Hildenborough
Primary Citation
Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation.
Int J Mol Sci 24 ? ? (2022)
PMID: 36613918 DOI: 10.3390/ijms24010476

Abstact

Metal-dependent formate dehydrogenases (Fdh) catalyze the reversible conversion of CO2 to formate, with unrivalled efficiency and selectivity. However, the key catalytic aspects of these enzymes remain unknown, preventing us from fully benefiting from their capabilities in terms of biotechnological applications. Here, we report a time-resolved characterization by X-ray crystallography of the Desulfovibrio vulgaris Hildenborough SeCys/W-Fdh during formate oxidation. The results allowed us to model five different intermediate structures and to chronologically map the changes occurring during enzyme reduction. Formate molecules were assigned for the first time to populate the catalytic pocket of a Fdh. Finally, the redox reversibility of DvFdhAB in crystals was confirmed by reduction and reoxidation structural studies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures