8BJV image
Deposition Date 2022-11-08
Release Date 2023-11-22
Last Version Date 2024-05-29
Entry Detail
PDB ID:
8BJV
Title:
Crystal structure of YopR
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SPbeta prophage-derived uncharacterized protein YopR
Gene (Uniprot):yopR
Chain IDs:A, B, C
Chain Length:326
Number of Molecules:3
Biological Source:Bacillus subtilis subsp. subtilis str. 168
Ligand Molecules
Primary Citation
Characterization of a unique repression system present in arbitrium phages of the SPbeta family.
Cell Host Microbe 31 2023 2037.e8 (2023)
PMID: 38035880 DOI: 10.1016/j.chom.2023.11.003

Abstact

Arbitrium-coding phages use peptides to communicate and coordinate the decision between lysis and lysogeny. However, the mechanism by which these phages establish lysogeny remains unknown. Here, focusing on the SPbeta phage family's model phages phi3T and SPβ, we report that a six-gene operon called the "SPbeta phages repressor operon" (sro) expresses not one but two master repressors, SroE and SroF, the latter of which folds like a classical phage integrase. To promote lysogeny, these repressors bind to multiple sites in the phage genome. SroD serves as an auxiliary repressor that, with SroEF, forms the repression module necessary for lysogeny establishment and maintenance. Additionally, the proteins SroABC within the operon are proposed to constitute the transducer module, connecting the arbitrium communication system to the activity of the repression module. Overall, this research sheds light on the intricate and specialized repression system employed by arbitrium SPβ-like phages in making lysis-lysogeny decisions.

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Primary Citation of related structures
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