8BHX image
Deposition Date 2022-11-01
Release Date 2023-09-27
Last Version Date 2023-10-04
Entry Detail
PDB ID:
8BHX
Title:
High resolution structure of the iron Superoxide Dismutase from Thermobifida fusca
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase
Gene (Uniprot):Tfu_0957
Chain IDs:A, B
Chain Length:204
Number of Molecules:2
Biological Source:Thermobifida fusca
Primary Citation
Initial characterization of an iron superoxide dismutase from Thermobifida fusca.
J.Biol.Inorg.Chem. 28 689 698 (2023)
PMID: 37725277 DOI: 10.1007/s00775-023-02019-9

Abstact

Superoxide dismutases (SODs) are enzymes that catalyze the dismutation of the superoxide radical anion into O2 and H2O2 in a two-step reaction. They are ubiquitous to all forms of life and four different types of metal centers are detected, dividing this class of enzymes into Cu-/Zn-, Ni-, Mn-, and Fe-SODs. In this study, a superoxide dismutase from the thermophilic bacteria Thermobifida fusca (TfSOD) was cloned and expressed before the recombinant enzyme was characterized. The enzyme was found to be active for superoxide dismutation measured by inhibition of cytochrome c oxidation and the inhibition of the autoxidation of pyrogallol. Its pH-optimum was determined to be 7.5, while it has a broad temperature optimum ranging from 20 to 90 °C. Combined with the Tm that was found to be 78.5 ± 0.5 °C at pH 8.0, TfSOD can be defined as a thermostable enzyme. Moreover, the crystal structure of TfSOD was determined and refined to 1.25 Å resolution. With electron paramagnetic resonance spectroscopy, it was confirmed that iron is the metal co-factor of TfSOD. The cell potential (Em) for the TfSOD-Fe3+/TfSOD-Fe2+ redox couple was determined to be 287 mV.

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