ISDA

Deposition Date 2022-10-27

Release Date 2023-11-08

Last Version Date 2025-07-02

Entry Detail

PDB ID:

8BG6

Keywords:

PROTEIN BINDING

Title:

SARS-CoV-2 S protein in complex with pT1644 Fab

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Drosophila melanogaster

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.11 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:pT1644 Fab heavy chain
Chain IDs:A
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:pT1644 Fab light chain
Chain IDs:B
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:C (auth: E)
Chain Length:1273
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Ligand Molecules

NAG

Primary Citation

Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses?

Stein, C.S, Hansen, G, Ssebyatika, G.L, Stroeh, L, Benecke, T, Menz, S, Waldmann, J.-Y, Vollmer, B, Tipp, S, Ochulor, O, Herold, E, Schwarzloh, B, Mutschall, D, Zischke, J.-Y, Cordes, A, Puppe, W, Schneider, T, Hinrichs, I, Blasczyk, R, Kleine-Weber, H, Hoffmann, M, Hoeper, M, Kaiser, F.K, Gonzalez-Hernandez, M, Armando, F.K, Ciurkiewicz, M, Beythien, G, Poehlmann, S, Baumgaertner, W, Gruenewald, K, Osterhaus, A, Schulz, T, Krey, T.Show

To be published ? ? ? (?)

Primary Citation of related structures